（2006年2月発行→サイト）
この最新号は〈Special Issue - Phylogenetic Inferencing: Beyond Biology〉と銘打たれている．全論文を pdf でダウンロード可能．
【目次】
Indra Neil Sarkar - Phylogenetics in the modern era 3Part I: Gathering and Organizing Data for Comparative Studies
Rob DeSalle - What's in a character? 6
Aloysius J. Phillips - Homology assessment and molecular sequence alignment 18
John J. Wiens - Missing data and the design of phylogenetic analyses 34Part II: Inferring Data into Phylogenetic Trees
Griffin Weber, Lucila Ohno-Machado, Stuart Shieber - Representation in stochastic search for phylogenetic tree reconstruction 43
Carolin Kosiol, Lee Bofkin, Simon Whelan - Phylogenetics by likelihood: Evolutionary modeling as a tool for understanding the genome 51
Michael A. Charleston, Susan L. Perkins - Traversing the tangle: Algorithms and applications for cophylogenetic studies 62Part III: Assessing the Reliability of Phylogenetics
Mary G. Egan - Support versus corroboration 72
Paul J. Planet - Tree disagreement : Measuring and testing incongruence in phylogenies 86
