『Modern Phylogenetic Comparative Methods and Their Application in Evolutionary Biology: Concepts and Practice』

目

László Zsolt Garamszegi (ed.)

（2014年刊行, Springer-Verlag, Berlin, xvi+552 pp., ISBN:9783662435502 [hbk] → 版元ページ｜コンパニオンサイト）

系統学的種間比較法の計算ツールは今ではよりどりみどり．

【目次】
Foreword ― Mark Pagel vii
Preface ― László Zsolt Garamszegi ix


    Part I Introduction

  1. 1 An Introduction to the Phylogenetic Comparative Method ― Emmanuel Paradis 3
  2. 2 Working with the Tree of Life in Comparative Studies: How to Build and Tailor Phylogenies to Interspecific Datasets ― László Zsolt Garamszegi and Alejandro Gonzalez-Voyer 19
  3. 3 An Introduction to Supertree Construction (and Partitioned Phylogenetic Analyses) with a View Toward the Distinction Between Gene Trees and Species Trees ― Olaf R. P. Bininda-Emonds 49
  4. 4 Graphical Methods for Visualizing Comparative Data on Phylogenies ― Liam J. Revell 77
  5. 5 A Primer on Phylogenetic Generalised Least Squares ― Matthew R. E. Symonds and Simon P. Blomberg 105
  6. 6 Statistical Issues and Assumptions of Phylogenetic Generalized Least Squares ― Roger Mundry 131

    7. Part II Handling Phylogenies in Different Statistical Designs

  7. 7 Uncertainties Due to Within-Species Variation in Comparative Studies: Measurement Errors and Statistical Weights ― László Zsolt Garamszegi 157
  8. 8 An Introduction to Phylogenetic Path Analysis ― Alejandro Gonzalez-Voyer and Achaz von Hardenberg 201
  9. 9 Phylogenetic Regression for Binary Dependent Variables ― Anthony R. Ives and Theodore Garland Jr. 231
  10. 10 Keeping Yourself Updated: Bayesian Approaches in Phylogenetic Comparative Methods with a Focus on Markov Chain Models of Discrete Character Evolution ― Thomas E. Currie and Andrew Meade 263
  11. 11 General Quantitative Genetic Methods for Comparative Biology ― Pierre de Villemereuil and Shinichi Nakagawa 287
  12. 12 Multimodel-Inference in Comparative Analyses ― László Zsolt Garamszegi and Roger Mundry 305

    13. Part III Specific Models for Studying Evolutionary Mechanisms

  13. 13 Simulation of Phylogenetic Data ― Emmanuel Paradis 335
  14. 14 Use and Misuse of Comparative Methods in the Study of Adaptation ― Thomas F. Hansen 351
  15. 15 Modelling Stabilizing Selection: The Attraction of Ornstein-Uhlenbeck Models ― Brian C. O’Meara and Jeremy M. Beaulieu 381
  16. 16 Hidden Markov Models for Studying the Evolution of Binary Morphological Characters ― Jeremy M. Beaulieu and Brian C. O’Meara 395
  17. 17 Detecting Phenotypic Selection by Approximate Bayesian Computation in Phylogenetic Comparative Methods ― Nobuyuki Kutsukake and Hideki Innan 409
  18. 18 Phylogenetic Comparative Methods for Studying Clade-Wide Convergence ― D. Luke Mahler and Travis Ingram 425
  19. 19 Metrics and Models of Community Phylogenetics ― William D. Pearse, Andy Purvis, Jeannine Cavender-Bares and Matthew R. Helmus 451
  20. 20 Event-Based Cophylogenetic Comparative Analysis ― Michael Charleston and Ran Libeskind-Hadas 465
  21. 21 Phylogenetic Prediction to Identify “Evolutionary Singularities” ― Charles L. Nunn and Li Zhu 481
  22. 22 Preparing Paleontological Datasets for Phylogenetic Comparative Methods ― David W. Bapst 515
Index 545