David A. Morrison
（2011年12月刊行，RJR Productions, Uppsala, vi+216 pp., ISBN:9789198009903 → 版元ページ［pdf: open access］）
本書の著者は〈The Genealogical World of Phylogenetic Networks〉というブログを開設している．
【目次】
Preface vIntroduction 1
1.1 Introductory Examples 1
1.2 Biology and Phylogenetics 10
1.3 Biology and Bioinformatics 14Phylogenetic Analysis 19
2.1 A Model of Evolutionary History 20
2.2 The Logic of Phylogeny Reconstruction 25
2.3 The Practice of Phylogeny Reconstruction 29
2.4 Rooted versus Unrooted Trees 34
2.5 Introduction to Phylogenetic Networks 40
2.6 The Causes of Reticulation 44
2.7 More on Phylogenetic Networks 46Data-Display Networks 51
3.1 Exploratory Data Analysis 51
3.2 Features and Limitations of Networks 56
3.3 Character-Display Networks 62
3.4 Tree-Display Networks 90
3.5 Available Software 100Evolutionary Networks 105
4.1 Evolutionary Analysis 106
4.2 Features and Limitations of Networks 114
4.3 Cluster and Triplet Networks 128
4.4 Process-Based Networks 137
4.5 Available Software 158Concluding Remarks 163
5.1 Overview 163
5.2 Comparison 165
5.3 Hypothesis Testing 167
5.4 The Future 169
Examples of Reticulation Causes 171
References 185
Glossary 205
Index 213
