『Bayesian Phylogenetics: Methods, Algorithms, and Applications』

Ming-Hui Chen, Lynn Kuo, Paul O. Lewis (eds.)

(2014年5月27日刊行,Chapman & Hall / CRC Press[Series: Chapman & Hall/CRC Mathematical and Computational Biology], Boca Raton, xxx+365 pp., ISBN:9781466500792 [hbk] → 版元ページ

【目次】
List of Figures xiii
List of Tables xxi
Preface xxv
Editors xxvii
Contributors xxix


  1. Bayesian phylogenetics: methods, computational algorithms, and applications
  2. Priors in Bayesian phylogenetics
    Ying Wang and Ziheng Yang 5
  3. IDR for marginal likelihood in Bayesian phylogenetics
    Serena Arima and Luca Tardella 25
  4. Bayesian model selection in phylogenetics and genealogy-based population genetics
    Guy Baele and Philippe Lemey 59
  5. Variable tree topology stepping-stone marginal likelihood estimation
    Mark T. Holder, Paul O. Lewis, David L. Swofford, and David Bryant 95
  6. Consistency of marginal likelihood estimation when topology varies
    Rui Wu, Ming-Hui Chen, Lynn Kuo, and Paul O. Lewis 113
  7. Bayesian phylogeny analysis
    Sooyoung Cheon and Faming Liang 129
  8. Sequential Monte Carlo (SMC) for Bayesian phylogenetics
    Alexandre Bouchard-Côté 163
  9. Population model comparison using multi-locus datasets
    Michal Palczewski and Peter Beerli 187
  10. Bayesian methods in the presence of recombination
    Mary K. Kuhner 201
  11. Bayesian nonparametric phylodynamics
    Julia A. Palacios, Mandev S. Gill, Marc A. Suchard, and Vladimir N. Minin 229
  12. Sampling and summary statistics of endpoint-conditioned paths in DNA sequence evolution
    Asger Hobolth and Jeffrey L. Thorne 247
  13. Bayesian inference of species divergence times
    Tracy A. Heath and Brian R. Moore 277


Bibliography 319
Index 359